Amdavad Junction is a crime mystery cum thriller that revolves around two honest police officers, Rohan and Gunjan, working for the CBI. They are summoned to solve the mystery of an unidentified body dumped on the tracks at Ahmedabad Railway Station. The case becomes tedious as they are unable to identify the victim due to the stage of decomposition. As the media hype around the case builds, the two police officers are unable to get hold of the motive or the pattern of the murderer. As days pass, and the body is still unclaimed for, the irony behind the ethics of journalism is very apparent and shows its ugly face as the two officers are pronounced incapable of solving the mystery. Subsequently, when they conduct an anatomical investigation of the decomposed body, the clues lead them to a game of cat-and-mouse that might lead them to the deadly murderer. Will they be able to prove him/her guilty?
