Season 3

Astronaut John Crichton attempts to use the Earth's atmosphere to propel his module at high speeds but is hit by a radiation wave and is sucked through a wormhole into a distant part of the universe.

A locator beacon, automatically broadcasting its exact location to any Peacekeeper forces in the area, is discovered inextricably fused into Moya's neural nexus.

The crew rescues a scientist and his assistant from a disintegrating ship. Crichton starts seeing the future, which holds death for the crew and Moya. He tries to influence the course of events but cannot change the outcome until they all learn what their guests are truly hiding.

Rygel is captured and held for ransom by some bounty hunters. Rygel "borrowed" a crystal from Moya, without the crystal Moya cannot maintain her orbit and will crash into the planet if it isn't returned shortly.

After finding the legendary Peacekeeper battleship, Zelbinion, dead in space and emptied of most of its useful technologies Crichton, Aeryn, and D'Argo find a Peacekeeper tech under Crais's command, Gilina, who survived a raid on the ship. Under threat of another scavenger attack, they work to get the shield generator on board the Zelbinion working. As they share the work, Gilina and Crichton grow much closer.

The crew visits a planet full of happy workers. Soon D'Argo and Zhaan start working and refuse to return to the ship. Meanwhile Rygel's body fluids become explosive and Aeryn and Pilot must learn why before Rygel dies.